I also experienced this issue, first on an Ubuntu GNOME 16.10 VM, now on
my Ubuntu GNOME 16.04.1 installation. In my case the files also appear
identical.
** Also affects: apparmor
Importance: Undecided
Status: New
** Changed in: apparmor
Status: New => Confirmed
** Also affects: ubuntu-gnome
Importance: Undecided
Status: New
** Changed in: ubuntu-gnome
Status: New => Confirmed
** Tags added: yakkety
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https://bugs.launchpad.net/bugs/1614215
Title:
"md5sums differ" message seems to indicate an install problem
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