It was fixed on 2016-07-31 and included in recently released snapd 2.13
(I just made a quick test with latest version and can't reproduce).
Marking as fixed.
** Changed in: snapd (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/1611483
Title:
"snap remove" doesn't remove /snap/$SNAP_NAME
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