Just to clarify I am *not* running Xubuntu.

This install may well have started out as Xubuntu but it was
successfully converted to Ubuntu during the Xenial cycle. gedit worked
perfectly both before and after upgrading to *Ubuntu* Yakkety.

I noticed this problem yesterday so possibly caused by a conflict with a
recently upgraded package?

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https://bugs.launchpad.net/bugs/1620806

Title:
  gedit edit window  is transparent

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