I retried with ubuntu 16.04, qemu-img version 2.5.0 (Debian 1:2.5+dfsg-
5ubuntu10.4).

While the original file (freetz vmdk) is not available (they use .ova now), I 
got another .vmdk file from
http://www.osboxes.org/debian/#debian-8-5-vmware

qemu-img convert Debian\ 8.5\ \(64bit\).vmdk -O raw test.raw
qemu-img convert Debian\ 8.5\ \(64bit\).vmdk -O qcow2 test.qcow2

Both worked, and I could boot the system I converted from .vmdk using
qemu-kvm.

Looks as if this issue got fixed, finally.

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https://bugs.launchpad.net/bugs/905095

Title:
  qemu-img can't convert vmdk file: Operation not permitted

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