Public bug reported:

In Ubuntu 16.10, I have gnome-terminal in my launcher.  When I start it,
I see two terminals in the launcher - one representing the running
terminal(s), one that allows me to open another terminal.  No other
application seems to behave this way.  I don't believe this behaviour
was evident in 16.04.

FWIW I have Ubuntu Tweak Tool also installed and I have selected
minimize single window applications on click (which works).  Also this
was an upgrade from 16.04.

ProblemType: Bug
DistroRelease: Ubuntu 16.10
Package: gnome-terminal 3.20.2-1ubuntu5
ProcVersionSignature: Ubuntu 4.8.0-22.24-generic 4.8.0
Uname: Linux 4.8.0-22-generic x86_64
ApportVersion: 2.20.3-0ubuntu8
Architecture: amd64
CurrentDesktop: Unity
Date: Sun Oct 16 21:06:42 2016
InstallationDate: Installed on 2016-02-03 (256 days ago)
InstallationMedia: Ubuntu 15.10 "Wily Werewolf" - Release amd64 (20151021)
SourcePackage: gnome-terminal
UpgradeStatus: Upgraded to yakkety on 2016-10-13 (3 days ago)

** Affects: gnome-terminal (Ubuntu)
     Importance: Undecided
         Status: New

** Tags: amd64 apport-bug yakkety

** Attachment added: "In this screenshot two gnome-terminals can be seen in 
launcher; only one EasyTag though, even though also open."

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  gnome-terminal appears in launcher twice when running

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