Hi,
from the log
mysql_upgrade: Got error: 2002: Can't connect to local MySQL server through 
socket '/var/run/mysqld/mysqld.sock' (2) while connecting to the MySQL server
Upgrade process encountered error and will not continue.
mysql_upgrade failed with exit status 11

That means the server did not start, and due to that later processes of
the upgrade would fail - therefore it breaks here.

The error log itself doesn't hold too much on that - it seems to start shutting 
down right after being up:
2017-01-20T11:50:55.797820Z 0 [Note] mysqld: ready for connections.
Version: '5.7.17-0ubuntu0.16.04.1'  socket: '/tmp/tmp.4JyEzHaYGM/mysqld.sock'  
port: 3306  (Ubuntu)
2017-01-20T11:50:55.798261Z 0 [Note] Giving 0 client threads a chance to die 
gracefully
2017-01-20T11:50:55.798287Z 0 [Note] Shutting down slave threads

Your config at 
https://launchpadlibrarian.net/303220958/MySQLConf.etc.mysql.mysql.conf.d.mysqld.cnf.txt
 uses the default socket path, so other than the unexpected immediate shutdown 
I don't see an issue.
I'd expect more a "error: Reason" anywhere, but this way I'm kind of lost.

The reason the messge shows up over and over again is that it retries
every time.

I wonder if anything comes to your mind that this could be any sort of a
special case to your custom setup of mysql?


** Changed in: mysql-5.7 (Ubuntu)
       Status: Confirmed => Incomplete

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https://bugs.launchpad.net/bugs/1658067

Title:
  package mysql-server-5.7 5.7.17-0ubuntu0.16.04.1 failed to
  install/upgrade: subprocess installed post-installation script
  returned error exit status 1

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