Actually this can be modified.  You will need to setup modprobe options similar 
to http://osdir.com/ml/hardware.lirc/2005-11/msg00044.html
This can be achieved by creating a file /etc/modprobe.d/lirc.  In it, add a 
line like this:

options lirc_serial io=0x2f8 irq=3

rmmod and modprobe lirc_serial again, and you will have it using a
different port.

** Changed in: lirc (Ubuntu)
       Status: New => Won't Fix

-- 
Lirc 0.8.2-0ubuntu8 doesn't allow changing serial port address
https://bugs.launchpad.net/bugs/152871
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