How much time had elapsed between the user.creation step and the manual
run of ssh-keygen? Perhaps the ssh-keygen just ran quickly because the
kernel had already accumulated enough entropy.

Do these keys need to be 4096 bit RSA keys? curve25519 ecc keys are
vastly smaller, faster to generate, and should provide security roughly
on par with 2048 bit RSA keys. (There are longer curves in case RSA 4096
security level is important for this use; see Ed448-goldilocks, m-511,
e-521, for examples.)

Thanks

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https://bugs.launchpad.net/bugs/1638537

Title:
  snapd eats 100% CPU for about 5 minutes on first boot causing a load
  of >2.0

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