Public bug reported:
There is an error in the wrapper for the java class, which means that
properly quoted arguments (like "File name.extension") get expanded, and
passed as File name.extension
from /usr/bin/TrimmomaticSE
# Original
#java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL $@
# Fixed
java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL "$@"
ProblemType: Bug
DistroRelease: Ubuntu 16.04
Package: trimmomatic 0.35+dfsg-1
ProcVersionSignature: Ubuntu 4.4.0-83.106-generic 4.4.70
Uname: Linux 4.4.0-83-generic x86_64
NonfreeKernelModules: nvidia_uvm nvidia_drm nvidia_modeset nvidia
ApportVersion: 2.20.1-0ubuntu2.6
Architecture: amd64
CurrentDesktop: Unity
Date: Tue Jul 4 09:31:26 2017
EcryptfsInUse: Yes
InstallationDate: Installed on 2016-01-01 (549 days ago)
InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Alpha amd64 (20151209)
PackageArchitecture: all
SourcePackage: trimmomatic
UpgradeStatus: No upgrade log present (probably fresh install)
** Affects: trimmomatic (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug xenial
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https://bugs.launchpad.net/bugs/1702235
Title:
trimmomatic fails on spaces in filenames
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