Still got this today on dist-upgrading a 16.04 Server. Not very neat and
caused some concern for bootability until reading here and the Debian
bug made me realize that it is caused by the way triggers invocate lvm
tools:

Setting up mdadm (3.3-2ubuntu7.4) ...
update-initramfs: deferring update (trigger activated)
Generating grub configuration file ...
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2303: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2303: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2316: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2316: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2329: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2329: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2342: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2342: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2402: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 2402: 
/usr/sbin/grub-probe
Found linux image: /boot/vmlinuz-4.4.0-98-generic
Found linux image: /boot/vmlinuz-4.4.0-97-generic
Found initrd image: /boot/initrd.img-4.4.0-97-generic
Found linux image: /boot/vmlinuz-4.4.0-96-generic
Found initrd image: /boot/initrd.img-4.4.0-96-generic
Found linux image: /boot/vmlinuz-4.4.0-93-generic
Found initrd image: /boot/initrd.img-4.4.0-93-generic
Found linux image: /boot/vmlinuz-4.4.0-87-generic
Found initrd image: /boot/initrd.img-4.4.0-87-generic
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 3125: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on vgs invocation. Parent PID 3125: 
/usr/sbin/grub-probe
File descriptor 3 (pipe:[379519083]) leaked on lvs invocation. Parent PID 3241: 
/bin/sh
done
update-rc.d: warning: start and stop actions are no longer supported; falling 
back to defaults

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https://bugs.launchpad.net/bugs/1313784

Title:
  File descriptors leaked on lvs invocation

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