The lines with (EE) are errors from the Xwayland process. And if
Xwayland goes down then so does gnome-shell (bug 1505409, bug 1556601).
Your logs show your session crash is superficially one of those two
bugs:

Oct 30 05:46:19 username-SP4 gnome-shell[7083]: Connection to xwayland
lost

However the root cause is the Xwayland crash so let's make this bug
about the Xwayland crash. It sounds a known issue here...
https://phabricator.freedesktop.org/T7722


** Package changed: gnome-shell (Ubuntu) => xorg-server (Ubuntu)

** Tags added: xwayland

** Summary changed:

- session crashed with wl_registry@2: error 0: invalid global wl_output (36) 
after kernel:  [drm:intel_mst_disable_dp [i915]] *ERROR* failed to update 
payload -22
+ Xwayland crashed with wl_registry@2: error 0: invalid global wl_output (36) 
after kernel:  [drm:intel_mst_disable_dp [i915]] *ERROR* failed to update 
payload -22

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https://bugs.launchpad.net/bugs/1728588

Title:
  Xwayland crashed with wl_registry@2: error 0: invalid global wl_output
  (36) after kernel:  [drm:intel_mst_disable_dp [i915]] *ERROR* failed
  to update payload -22

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