On a system upgraded to 17.10, I see the correct permissions:

drwx------ 2 _apt root 4096 Nov  1 00:10 /var/lib/update-notifier
/package-data-downloads/partial/

Martin, are you seeing this also or do you see something different?

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https://bugs.launchpad.net/bugs/1522675

Title:
  Warning messages about unsandboxed downloads

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