I had a similar problem on 17.10, logging on as Ubuntu xorg (not unity).
I tried running with just "ubuntu appindicators", but several indicators
were missing (particularly classicmenu and gnome encfs).

Eventually I got all the icons I need back by installing both "topicons
plus" and "Kstatusnotifieritem/appindictor support" extensions and
disabling "ubuntu appindicators".  On rebooting the latter then shows as
having an error (in gnome tweaks).

That's OK so far, since at least it now does what I need.

However, occasionally on starting up "ubuntu appindicators" becomes
enabled, and "Kstatusnotifieritem/appindictor support" disabled.  I then
lose my indicators, have to reset the extension statuses, reboot, and
cross my fingers.

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https://bugs.launchpad.net/bugs/1728449

Title:
  Indicator icons do not appear after upgrade to Ubuntu 17.10

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