I'm using it on laptop.

One pool holds OS + home directories and other more-or-less fast
changing stuff.

Another one holds only backups and VM images.

First reason was to try deduplication on VM dataset without affecting
main pool.

Second reason was to have two big partitions to do experiments - so if
necessary one pool can be moved to external HDD, partition can be
formatted and used as Windows or any other way.

Having one single big partition spanning whole disk proved to decrease
flexibility in trying new versions of OS/other OSes and etc.


>From your message I hear that for NAS/storage systems this is not recommended 
>scenario.

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https://bugs.launchpad.net/bugs/1731735

Title:
  zfs scrub starts on all pools simultaneously

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