*** This bug is a duplicate of bug 1681547 ***
    https://bugs.launchpad.net/bugs/1681547

The issue might be with your login shell - XDG_DATA_DIRS (which is what
was fixed in snapd 2.28) is set when /etc/profile is sourced. If you
don't source /etc/profile, such as for zsh (the shell I am using) or
fish, then XDG_DATA_DIRS is never set and the .desktop files in
/var/lib/snapd/desktop won't be found.

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https://bugs.launchpad.net/bugs/1718590

Title:
  Atom installed as a snap doesn't show up in menus or in the terminal

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