I'm also using a MacBook Pro 2015, but with Ubuntu 17.10. I'm not seeing
exactly the same symptoms. Specifically, I do not get 'Assuming host is
dying, halting host.'

I do get these symptoms:
1. On boot, each key press takes about 8 seconds (affects Mac restore and Grub, 
making it almost impossible to use them). By the time the Linux kernel starts, 
everything speeds up, and I have no problem entering a luks passphrase.
2. Very occasionally my keyboard and mouse completely stop working and I have 
to reboot
3. Resuming from sleep, there is a 3-4 minutes period where USB devices won't 
work and I get a ton of "xhci_hcd 0000:00:14.0: Timeout while waiting for setup 
device command" messages.

I've had these issues since 16.04 I think.

I'm also going to compile a kernel with xhci_hcd as a module and then
blacklist (just to test).

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https://bugs.launchpad.net/bugs/1668105

Title:
  xhci_hcd module turns off usb host controller on boot

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