Thank you Alan, for providing these valuable info.
Actually i noticed the polling by looking at dmesg. I suspected that the errors 
in my distribution's kernel (4.4.0 in 16.04) were somehow related to a kernel 
polling process with a default of 10 minutes.

I will try to do both things you suggest: try out a 4.14+ kernel and
disable the polling, hoping that the first will work.

FYI, 14.04 with 3.19 (iirc) doesn't wake up the drives out of the box.
Is the polling something that has been added after? Or maybe there is
some additional operation performed in the polling that now wakes up the
drive (and is hopefully related to the fixed bug you mention).

I will post my findings as soon as i have them!

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https://bugs.launchpad.net/bugs/1733068

Title:
  Unmounted USB drives wake up on 16.04

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