I can't reproduce the issue on the XPS 9360 at my hand, which
unfortunately is not the mass production one, with both BIOS 2.3.1 (the
version you currently used) and 2.4.2.

The TBT's XHCI HC failed to suspend,
[   87.718350] xhci_hcd 0000:39:00.0: WARN: xHC CMD_RUN timeout
[   87.718372] suspend_common(): xhci_pci_suspend+0x0/0xd0 returns -110
[   87.718377] pci_pm_suspend(): hcd_pci_suspend+0x0/0x30 returns -110
[   87.718385] dpm_run_callback(): pci_pm_suspend+0x0/0x130 returns -110
[   87.718391] PM: Device 0000:39:00.0 failed to suspend async: error -110

Also we can see that:
01:00.0 PCI bridge [0604]: Intel Corporation DSL6340 Thunderbolt 3 Bridge 
[Alpine Ridge 2C 2015] [8086:1576] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: pcieport
        Kernel modules: shpchp

02:00.0 PCI bridge [0604]: Intel Corporation DSL6340 Thunderbolt 3 Bridge 
[Alpine Ridge 2C 2015] [8086:1576] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: pcieport
        Kernel modules: shpchp

02:01.0 PCI bridge [0604]: Intel Corporation DSL6340 Thunderbolt 3 Bridge 
[Alpine Ridge 2C 2015] [8086:1576] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: pcieport
        Kernel modules: shpchp

02:02.0 PCI bridge [0604]: Intel Corporation DSL6340 Thunderbolt 3 Bridge 
[Alpine Ridge 2C 2015] [8086:1576] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: pcieport
        Kernel modules: shpchp

03:00.0 System peripheral [0880]: Intel Corporation DSL6340 Thunderbolt 3 NHI 
[Alpine Ridge 2C 2015] [8086:1575] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: thunderbolt
        Kernel modules: thunderbolt

39:00.0 USB controller [0c03]: Intel Corporation DSL6340 USB 3.1 Controller 
[Alpine Ridge] [8086:15b5] (rev ff) (prog-if ff)
        !!! Unknown header type 7f
        Kernel driver in use: xhci_hcd

All these PCI devices are not responsive.

Can you attach the output `lspci` right after boot, without plugging any
USB-C/TBT device?

Also, can you upgrade your BIOS and Thunderbolt firmware? Hopefully this
can fix the issue.

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https://bugs.launchpad.net/bugs/1738224

Title:
  Suspend broken after kernel upgrade

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