Public bug reported:
I am running pbsim with the following command on Ubuntu 17.10:
pbsim --data-type CLR --depth 20 --model_qc
Methanolacinia_petrolearia.fasta DSM_2279.fasta
The complete output in the terminal is:
pbsim --data-type CLR --depth 20 --model_qc Methanolacinia_petrolearia.fasta
DSM_2279.fasta
:::: Simulation parameters :::
Simulated by stochastic model.
prefix : sd
data-type : CLR
depth : 20.000000
length-mean : 3000.000000
length-sd : 2300.000000
length-min : 100
length-max : 25000
accuracy-mean : 0.780000
accuracy-sd : 0.020000
accuracy-min : 0.750000
accuracy-max : 1.000000
difference-ratio : 10:60:30
Segmentation fault (core dumped)
I recieved pbsim from the bioconda package
ProblemType: Bug
DistroRelease: Ubuntu 17.10
Package: pbsim 1.0.3-3
ProcVersionSignature: Ubuntu 4.13.0-37.42-generic 4.13.13
Uname: Linux 4.13.0-37-generic x86_64
ApportVersion: 2.20.7-0ubuntu3.7
Architecture: amd64
CurrentDesktop: ubuntu:GNOME
Date: Mon Apr 2 11:55:41 2018
Dependencies:
gcc-7-base 7.2.0-8ubuntu3.2
libc6 2.26-0ubuntu2.1
libgcc1 1:7.2.0-8ubuntu3.2
InstallationDate: Installed on 2018-03-26 (6 days ago)
InstallationMedia: Ubuntu 16.04.2 LTS "Xenial Xerus" - Release amd64
(20170215.2)
SourcePackage: pbsim
UpgradeStatus: Upgraded to artful on 2018-03-26 (6 days ago)
** Affects: pbsim (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug artful wayland-session
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https://bugs.launchpad.net/bugs/1760586
Title:
Segmentation fault (core dumped) appears whenever I want to run pbsim
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