This bug was fixed in the package openssl - 1.1.0g-2ubuntu4

---------------
openssl (1.1.0g-2ubuntu4) bionic; urgency=medium

  * debian/patches/rehash-pass-on-dupes.patch: Don't return 1 when a duplicate
    certificate is found. (LP: #1764848)

 -- Brian Murray <[email protected]>  Wed, 25 Apr 2018 10:03:48 -0700

** Changed in: openssl (Ubuntu Bionic)
       Status: In Progress => Fix Released

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https://bugs.launchpad.net/bugs/1764848

Title:
  Upgrade to ca-certificates to 20180409 causes ca-certificates.crt to
  be removed if duplicate certs found

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