I believe I've fixed this on my machine by changing the relevant
failregex line to:

^%(__prefix_line)spam_unix\(sshd:auth\):\s+authentication
failure;\s*logname=\S*\s*uid=\d*\s*euid=\d*\s*tty=\S*\s*ruser=\S*\s*rhost=<HOST>\s.*\n.*(?!sshd\[\d+\]:
Accepted).*$

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https://bugs.launchpad.net/bugs/1609666

Title:
  fail2ban is too severe when pam_unix + pam_ldap are used together

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