Xfce stores its display configuration in ~/.config/xfce4/xfconf/xfce-
perchannel-xml/displays.xml, so I do not see how that would affect GNOME
shell.
Did you check GNOME's configuration file/registry before and after
making changes in Xfce?
** Changed in: xfce4-settings (Ubuntu)
Status: New => Incomplete
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https://bugs.launchpad.net/bugs/1743816
Title:
changing XFCE monitor/display arrangement changes primary screen
properties in gnome-shell
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