Apparently there's a firmware update (I was running 1.10, which is about
a month old - I've updated the firmware several times during the life
time of this bug). I'll update and wait for it to happen again.

BTW - the behavior is usually that after this disconnect happens once, I
can reset the USB controller (using sysfs API to unbind and re-bind
xhci_hcd), but then it will get the problem again and again, several
times an hour (its not very predictable, sometimes I get 2 in a row and
sometimes half an hour can pass before it breaks again). I thought this
can be temperature related, so I pushed the computer to low power mode
after the first event of the day, and reset the bus, but it happened
again.

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https://bugs.launchpad.net/bugs/1766076

Title:
  USB over thunderbolt turns off every once in a while

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