I can confirm the issue using Ubuntu MATE 18.04 LTS as server and Ubuntu
MATE 16.04 LTS as client.

Applications work (open on client as expected): atril, brasero, charmap,
cheese, gnome-disks, engrampa, eom, firefox, gdebi-gtk, libreoffice,
mate-system-log, mate-calculator, mate-color-select, mate-dictionary,
mate-font-viewer, mate-search-tool, mate-system-monitor, mate-terminal,
pluma, mate-power-statistics, rhythmbox, shotwell, simple-scan, mate-
screenshot, thunderbird, transmission-gtk, vlc, nautilus .

Applications which do not work (open on server instead of on client):
caja, deja-dup, blueman-manager .

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  mate 18.04.1 xserver won't open caja on local machine

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