While you have deactivated the PPAs that actually isn't enough because
you still have software installed from those PPAs.  You'll need to
reenable them and then use the tool 'ppa-purge' to remove the PPA and
uninstall the software from it.  The release upgrader should have
instructed you to use ppa-purge.

** Changed in: ubuntu-release-upgrader (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/1825468

Title:
  I cannot upgrade to 18.10 from 18.04. It says that I have some 3d part
  ppa's that don't let me do it. I deactivated all ppa's from software
  center but problem persists

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