It is a bit unbelievable.

After extracting of atop package the `/lib` folder contains only one folder 
`/lib/systemd`.
But before the accident it was a symlink to `/usr/lib`.

So you have a serious bug in `dpkg` - it should distinguish between
ordinary objects and symlinks.

Problem is solvable by the following actions

   sudo chroot /media/user/problematic-disk/ busybox sh
   rm -rf /lib
   ln -s usr/lib lib

then boot the system and reinstall the package

   apt install atop --reinstall

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https://bugs.launchpad.net/bugs/1843476

Title:
  running `apt download atop` ; `sudo dpkg -x atop_2.4.0-3_amd64.deb /`
  kills the system

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