No extensions were installed. Also, I'm using the native AMDGPU drivers,
not the proprietary ones.

I've tested the vanilla GNOME session as you suggested, and the bug is
there too. Due to the hover highlighting of the panel items, I had a
visual cue to test with. The highlighting does not happen at the
unclickable spot. Move one pixel away from it, and the panel item lits
up again.

That was on Xorg, of course. On Wayland, the problem is gone, at least
initially. As I said on the initial report, after using the Wayland
session for a while, I started having the problem again. No idea what
caused it.

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https://bugs.launchpad.net/bugs/1849135

Title:
  Activities button does not respond to clicks on a specific pixel

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