I put more detail information to #97,
I am using Gnome shell 3.18.5 instead of Unity and Compiz.
that my application is base on Qt 5.6.1 with OpenGL.
Other apps that gimp, libreoffice, gedit don't have this issue.

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https://bugs.launchpad.net/bugs/1072206

Title:
  [nvidia] Window content is black or transparent

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