Public bug reported: since samtools/1.10-3, its autopkgtests run out of memory on Ubuntu infrastructure, but pass on Debian CI and for me locally on amd64. Please hint these tests or add samtools to list to run in a huge instance.
https://ci.debian.net/packages/s/samtools/testing/amd64/ test_sort: /tmp/autopkgtest.Mgxeg8/autopkgtest_tmp/samtools sort -@ 2 -t RG /tmp/autopkgtest.Mgxeg8/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - ERR: samtools sort: couldn't allocate memory for bam_mem .. failed ... ERR: samtools sort: couldn't allocate memory for bam_mem .. failed ... test_collate: /tmp/autopkgtest.Mgxeg8/autopkgtest_tmp/samtools collate --output-fmt=sam -O /tmp/autopkgtest.Mgxeg8/autopkgtest_tmp/test/dat/test_input_1_d.sam ERR: samtools sort: couldn't allocate memory for bam_mem .. failed ... ** Affects: htslib (Ubuntu) Importance: Undecided Status: New ** Affects: samtools (Ubuntu) Importance: Undecided Status: New ** Tags: update-excuse ** Tags added: update-excuse ** Also affects: htslib (Ubuntu) Importance: Undecided Status: New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1861673 Title: samtools: 1.10-3 autopkgtests run out of memory To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/htslib/+bug/1861673/+subscriptions -- ubuntu-bugs mailing list [email protected] https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
