I see a Thunar process for the directory in question:
ps ax | grep -i thun
 230091 ?        Sl     0:00 /usr/bin/Thunar 
file:///home/<redacted>/Desktop/<redacted>

Which is created immediately when I click on the icon. After the delay, the 
window appears (but is unresponsive). At that time I still only have the one 
Thunar process. After another delay, the window becomes responsive (still only 
one process).
At this point, I can click on other icons on the desktop and get a window 
immediately (still only one process), but the windows are unresponsive for the 
same delay.
Closing all windows, shutting down Thunar, and re-running puts me back to the 
beginning state of no window for a delay, and then unresponsive for a delay.

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https://bugs.launchpad.net/bugs/1874343

Title:
  Thunar hangs for several seconds on first launch

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