Ok, it seems after eliminating the above issue the sys_ptrace isn't triggered 
anymore.
And even if it is it seems not required for the functionality and would be 
rather unsafe.

Until I get a GPS lock chrony sees:
chronyc> sources
210 Number of sources = 10
MS Name/IP address         Stratum Poll Reach LastRx Last sample               
===============================================================================
#? GPS                           0   4     3    14  +1115ms[+1115ms] +/-  200ms
#? PPS                           0   4     1    14  +2000ms[+2000ms] +/-   69us
^- chilipepper.canonical.com     2   6    17    28   -611us[ -611us] +/-   44ms
...

After a while (and depending on signal quality) it syncs to the PPS.

chronyc> sources
210 Number of sources = 10
MS Name/IP address         Stratum Poll Reach LastRx Last sample               
===============================================================================
#x GPS                           0   4   177    24   -876ms[ -876ms] +/-  200ms
#- PPS                           0   4   177    21   +916us[ +916us] +/-   63us
^- chilipepper.canonical.com     2   6    37    53    +33us[  +33us] +/-   33ms
^- golem.canonical.com           2   6    37    52   +448us[ +448us] +/-   43ms
^- alphyn.canonical.com          2   6    73    50   +552us[ +552us] +/-  110ms
^- pugot.canonical.com           2   6    37    52   -429us[ -429us] +/-   50ms
^- a08.alphasrv.net              2   6    37    53  +1943us[+1943us] +/-   52ms
^- dns02.xstream-labs.com        2   6    37    53   +568us[ +568us] +/-   36ms
^- stratum2-3.NTP.TechFak.U>     2   6    37    53   -861us[ -861us] +/-   14ms
^* mail.masters-of-cloud.de      3   6    37    54    -45us[ -593us] +/-   12ms

Note sometimes it considers the GPS/PPS too noisy, but that might be right as I 
don't have the most pricey receiver nor the best reception. Or it considers 
(after a while) the PPS as good, but had already settles on a server and is not 
combining PPS with it despite the order of magnitude better resolution)
More antennas arriving later this week ...

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https://bugs.launchpad.net/bugs/1872175

Title:
  gpsd unable to open chrony PPS socket

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