Typically it helps to do a rmmod r8169 + modprobe r8169 to work around the BIOS 
bug.
Maybe also a PHY soft reset helps to make the PHY behave sanely again.
Can you test whether the following fixes the issue for you?

diff --git a/drivers/net/ethernet/realtek/r8169_main.c 
b/drivers/net/ethernet/realtek/r8169_main.c
index 8b665f2ec..9b1ad5d45 100644
--- a/drivers/net/ethernet/realtek/r8169_main.c
+++ b/drivers/net/ethernet/realtek/r8169_main.c
@@ -5104,6 +5104,17 @@ static int r8169_mdio_write_reg(struct mii_bus *mii_bus, 
int phyaddr,
        return 0;
 }
 
+static void rtl_phy_soft_reset(struct rtl8169_private *tp)
+{
+       int i = 30;
+
+       rtl_writephy(tp, MII_BMCR, BMCR_ANENABLE | BMCR_RESET);
+
+       do {
+               msleep(20);
+       } while (rtl_readphy(tp, MII_BMCR) & BMCR_RESET && --i);
+}
+
 static int r8169_mdio_register(struct rtl8169_private *tp)
 {
        struct pci_dev *pdev = tp->pci_dev;
@@ -5123,6 +5134,11 @@ static int r8169_mdio_register(struct rtl8169_private 
*tp)
        new_bus->read = r8169_mdio_read_reg;
        new_bus->write = r8169_mdio_write_reg;
 
+       /* A BIOS bug causes few boards to report an invalid PHY ID otherwise */
+       if (tp->mac_version == RTL_GIGA_MAC_VER_25 ||
+           tp->mac_version == RTL_GIGA_MAC_VER_26)
+               rtl_phy_soft_reset(tp);
+
        ret = devm_mdiobus_register(new_bus);
        if (ret)
                return ret;
-- 
2.26.2

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https://bugs.launchpad.net/bugs/1876593

Title:
  Ethernet not working/Realtek RTL8169 fails to load

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