Hmm,
so chrony-pid doesn't exist and was properly cleaned up for you - odd.

But then starting the daemon seems to just work (no errors) yet then we
get no running process.

We need to switch on more debug, would you mind running this:

$ bash -x /usr/lib/systemd/scripts/chronyd-starter.sh -d -F -1

That should
a) show what the script is doing due to the -x
b) show what chrony is doing and stay in foreground due to the -d

Hopefully that gives some more insight ...

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https://bugs.launchpad.net/bugs/1878005

Title:
  Chrony crashes on install from raspberry pi 2

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