I just experienced this behavior with Ubuntu 20.04 (Gnome, X11, Nvidia
GTX 1070). Only one window had focus. Some windows appeared in front of
the focused window, but I could not click on them - clicking on them
only sent mouse clicks to the window in the background. The "dots" in
the dock that show what applications are open all disappeared, and if I
moved my mouse over the apps then they became highlighted and wouldn't
un-highlight. This is the first time I've experienced this issue, I've
been using Ubuntu 20.04 since release, and 18.04 before that since its
release.

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https://bugs.launchpad.net/bugs/362359

Title:
  Focus gets stuck to a window - impossible to select other windows

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