Based on comment #2, this appears to not be a bug. The mode 777
(rwxrwxrwx) specifies that the files were executables so should be
executed on double-click and not "opened" with any app.
Please log a new bug for your remaining issue.
** Changed in: gnome-shell-extension-desktop-icons (Ubuntu)
Status: New => Invalid
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https://bugs.launchpad.net/bugs/1887514
Title:
Some desktop files don't open with double click or Enter
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