I thought I was losing my mind!

I have also been experiencing this issue, and today finally managed to
narrow it down to a specific cause. My issue starts when I am making use
of the CTRL+SHIFT+PRTSCR shortcut to take a screenshot of an area you
select.

I use this function frequently, and it sometimes results in my mouse
functionality being isolated to the window that currently has focus. If
I move my mouse cursor over another window I can see that the window
registers the mouse position (for example hover animations are
triggered) and scrolling works, but left and right click do not register
in that window until I use ALT+TAB to change focus to that window.

If I hover my mouse pointer over the top bar, the pointer icon changes
to a + which is the same icon that it changes to when you take the
screenshot, so it seems almost like the screenshot overlay mechanism
doesn't get reset/cleared correctly.

I hope this helps!

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https://bugs.launchpad.net/bugs/362359

Title:
  Focus gets stuck to a window - impossible to select other windows

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