This happens also if the text file resides on a cifs mount. How to reproduce:
Create a textfile on cifs/smb mount
Open it with mousepad. Change something. The error message pops up when trying 
to save the document

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https://bugs.launchpad.net/bugs/1930465

Title:
  mousepad editor warns "the document has been externally modified" when
  modifying a  soft linked text file

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