I have to say that it is quite a shame that Canonical does not provide a
proper solution for this problem, as it has quite a big impact if you
cannot update packages with security fixes anymore.

Anyway, I managed to solve the problem. From an earlier repo
installation, I had a key file with the troubling filename
"isv:ownCloud:desktop.asc" at "/etc/apt/trusted.gpg.d". After removing
that file ("sudo rm /etc/apt/trusted.gpg.d/isv:ownCloud:desktop.asc") I
was able to import new keys again.

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https://bugs.launchpad.net/bugs/1912526

Title:
  cannot import new keys if another malformed key exists

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