Public bug reported:
After updating ncbi-blast+ to 2.11.0 in proposed, both cct and kleborate
autopkgtests fail with timeouts. cct hangs consistently at the same
place:
[...]
Warning: [tblastn] The parameter -num_descriptions is ignored for output
formats > 4 . Use -max_target_seqs to control output
Performing BLAST search for sequence number 105
(orf_105_start=12818;end=12904;strand=1;rf=2).
Warning: [tblastn] The parameter -num_descriptions is ignored for output
formats > 4 . Use -max_target_seqs to control output
autopkgtest [15:16:05]: ERROR: timed out on command [...]
This is not trivially reproducible by running the autopkgtest locally.
Perhaps this is only reproducible in memory-restricted environments.
** Affects: ncbi-blast+ (Ubuntu)
Importance: Undecided
Status: New
** Tags: update-excuse
** Tags added: update-excuse
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https://bugs.launchpad.net/bugs/1947645
Title:
new version of ncbi-blast+ causes autopkgtest hangs
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