@xnox Well, initially I was also a bit puzzled noticing that not the standalone 
htslib is used, but an embedded htslib in bedtools.
But this is also upstream the case and htslib is not the only component that is 
bundled:
$ ls ./src/utils/
BamTools            BlockedIntervals  fileType    lineFileUtilities  tabFile
BamTools-Ancillary  chromsweep        general     NewChromsweep      ToolBase
bedFile             Contexts          GenomeFile  Point              VectorOps
bedFilePE           driver            gzstream    RecordOutputMgr    version
bedGraphFile        Fasta             htslib      sequenceUtilities
BinTree             FileRecordTools   KeyListOps  stringUtilities
And solving the situation for all of these will be a nighmare with a high risk 
of introducing problems on top and more difficulties on maintaining and making 
sure that the components are in place in the correct version ...

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https://bugs.launchpad.net/bugs/1961427

Title:
  zlib: compressBound() returns an incorrect result on z15

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