The problem was the old init script from openntpd which was run before
the init script from ntp and got removed (but not purged) by the install
of ntp. The openntpd script runs /usr/sbin/ntpd (which is the same
location as in ntp) but without any parameter, causing ntpd to not run
with the correct user/group.

There's a matching Debian bug here:

http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=423595

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ntpd can't write drift file
https://bugs.launchpad.net/bugs/178814
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