** Summary changed: - igv fails to build from source (on launchpad builder) due to the AWT headless exception + igv fails to build from source due to test failures
** Summary changed: - igv fails to build from source due to test failures + igv fails to build from source due to tests trying to access the internet ** Description changed: - Tests fail when building the package with the following exception: + Tests fail when building the package with the following exceptions: - org.broad.igv.prefs.PreferencesManagerTest > getThirdGenPreferences STANDARD_ERROR - SEVERE [Mar 04,2024 22:29] [PreferencesManager] Error overriding font scale factor - SEVERE [Mar 04,2024 22:29] [PreferencesManager] java.awt.HeadlessException - at java.desktop/sun.awt.HeadlessToolkit.getScreenResolution(HeadlessToolkit.java:122) - at org.broad.igv.prefs.PreferencesManager.init(PreferencesManager.java:73) - at org.broad.igv.prefs.PreferencesManager.getPreferences(PreferencesManager.java:52) - at org.broad.igv.prefs.PreferencesManagerTest.getThirdGenPreferences(PreferencesManagerTest.java:31) - at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) - at java.base/java.lang.reflect.Method.invoke(Method.java:580) - at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) - at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) - at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:61) - at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) - at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) - at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) - at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) - at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) - at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) - at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) - at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) - at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) - at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) - at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) - at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) - at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) - at org.junit.runners.ParentRunner.run(ParentRunner.java:413) - at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114) - at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57) - at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66) - at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51) - at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) - at java.base/java.lang.reflect.Method.invoke(Method.java:580) - at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) - at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) - at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32) - at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93) - at jdk.proxy1/jdk.proxy1.$Proxy3.processTestClass(Unknown Source) - at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108) - at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) - at java.base/java.lang.reflect.Method.invoke(Method.java:580) - at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) - at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) - at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146) - at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128) - at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404) - at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) - at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) - at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144) - at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) - at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) - at java.base/java.lang.Thread.run(Thread.java:1583) + org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 FAILED + java.net.UnknownHostException: dl.dropboxusercontent.com - This is due to UI tests trying to run on a headless builder + org.broad.igv.util.blat.BlatClientTest > classMethod FAILED + java.net.UnknownHostException: s3.amazonaws.com + + + org.broad.igv.tdf.TDFReaderTest > testReader FAILED + org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: http://data.broadinstitute.org/igvdata/tutorials/hg18/wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz.tdf<br>Error loading file: + + + [1] https://launchpadlibrarian.net/717517792/buildlog_ubuntu-noble-amd64.igv_2.17.1+dfsg-1_BUILDING.txt.gz ** Description changed: - Tests fail when building the package with the following exceptions: + Tests fail when building the package with the following exceptions[1]: org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 FAILED - java.net.UnknownHostException: dl.dropboxusercontent.com + java.net.UnknownHostException: dl.dropboxusercontent.com org.broad.igv.util.blat.BlatClientTest > classMethod FAILED - java.net.UnknownHostException: s3.amazonaws.com - + java.net.UnknownHostException: s3.amazonaws.com org.broad.igv.tdf.TDFReaderTest > testReader FAILED - org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: http://data.broadinstitute.org/igvdata/tutorials/hg18/wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz.tdf<br>Error loading file: + org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: http://data.broadinstitute.org/igvdata/tutorials/hg18/wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz.tdf<br>Error loading file: [1] https://launchpadlibrarian.net/717517792/buildlog_ubuntu-noble-amd64.igv_2.17.1+dfsg-1_BUILDING.txt.gz -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2056094 Title: igv fails to build from source due to tests trying to access the internet To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/igv/+bug/2056094/+subscriptions -- ubuntu-bugs mailing list [email protected] https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
