Public bug reported: R Bioconductor 3.19, compatible with R 4.4 (src:r-base 4.4.1-1 is already in Oracular) was released on 2024-05-01 [1].
The "transition" was started in Debian on 2024-08-16 [2]. No packages needs to be rebuilt, only new versions of the packages need to be uploaded. I believe there are 183 packages (all in universe) that need to be sync'd from Debian. Sync-ing them in the correct order will avoid the need for mass retries of build failures. 52 of these will require removal of armhf binaries. The recent test rebuild in Oracular [3] shows 14 r-bioc-* packages that FTBFS. I suggest waiting a week or so for the autopkgtest results in Debian. I'm not sure that this requires a FeatureFreeze exception, but filing this bug anyway as a place for discussion. [1] https://www.bioconductor.org/news/bioc_3_19_release/ [2] https://bugs.debian.org/1076843 [3] https://people.canonical.com/~ginggs/ftbfs-report/test-rebuild-20241209-oracular-oracular.html ** Affects: r-bioc-biocgenerics (Ubuntu) Importance: Undecided Status: New ** Description changed: R Bioconductor 3.19, compatible with R 4.4 (src:r-base 4.4.1-1 is already in Oracular) was released on 2024-05-01 [1]. The "transition" was started in Debian on 2024-08-16 [2]. No packages needs to be rebuilt, only new versions of the packages need to be uploaded. I believe there are 183 packages (all in universe) that need to be sync'd from Debian. Sync-ing them in the correct order will avoid the need for mass retries of build failures. 52 of these will require removal of armhf binaries. + The recent test rebuild in Oracular [3] shows 14 r-bioc-* that FTBFS. + I suggest waiting a week or so for the autopkgtest results in Debian. I'm not sure that this requires a FeatureFreeze exception, but filing this bug anyway as a place for discussion. - [1] https://www.bioconductor.org/news/bioc_3_19_release/ [2] https://bugs.debian.org/1076843 + [3] https://people.canonical.com/~ginggs/ftbfs-report/test-rebuild-20241209-oracular-oracular.html ** Description changed: R Bioconductor 3.19, compatible with R 4.4 (src:r-base 4.4.1-1 is already in Oracular) was released on 2024-05-01 [1]. The "transition" was started in Debian on 2024-08-16 [2]. No packages needs to be rebuilt, only new versions of the packages need to be uploaded. I believe there are 183 packages (all in universe) that need to be sync'd from Debian. Sync-ing them in the correct order will avoid the need for mass retries of build failures. 52 of these will require removal of armhf binaries. - The recent test rebuild in Oracular [3] shows 14 r-bioc-* that FTBFS. + The recent test rebuild in Oracular [3] shows 14 r-bioc-* packages that + FTBFS. I suggest waiting a week or so for the autopkgtest results in Debian. I'm not sure that this requires a FeatureFreeze exception, but filing this bug anyway as a place for discussion. [1] https://www.bioconductor.org/news/bioc_3_19_release/ [2] https://bugs.debian.org/1076843 [3] https://people.canonical.com/~ginggs/ftbfs-report/test-rebuild-20241209-oracular-oracular.html -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2077420 Title: [FFe] R Bioconductor 3.19 transition To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-bioc-biocgenerics/+bug/2077420/+subscriptions -- ubuntu-bugs mailing list [email protected] https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
