Public bug reported:
=========================== short test summary info ============================
FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus -
FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF -
FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog -
toil.job.JobException: No job has been set as the root in this job store
FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute -
FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
FAILED src/toil/test/utils/toilDebugTest.py::testFetchJobStoreFiles -
FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_print_job_info
- FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_run_job -
FileNotFoundError: [Errno 2] No such file or directory: 'python3.11'
ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest -
AttributeError: 'NoneType' object has no attribute 'strip'
ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore -
toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store
are not installed
ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore -
toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store
are not installed
ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore -
toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store
are not installed
ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore -
toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store
are not installed
====== 7 failed, 159 passed, 349 skipped, 16 errors in 291.28s (0:04:51) =======
E: pybuild pybuild:389: test: plugin custom failed with: exit code=1:
HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil python3.12 setup.py develop
--user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH
PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/.local/bin/:$PATH
TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.12 -m pytest -n auto --dist
loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore
src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore
src/toil/test/wdl/wdltoil_test.py --ignore src/toil/test/cwl/cwlTest.py
--ignore src/toil/test/src/promisedRequirementTest.py --ignore
src/toil/test/lib/test_ec2.py --ignore
src/toil/test/batchSystems/batchSystemTest.py --ignore
src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or
test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest
or testCwlexample or testVirtualEnv or ToilDocumentationTest or
test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or
DeferredFunctionTest or WdlToilTest or test_cactus_integration)"
/<<PKGBUILDDIR>>/src/toil/test
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12
returned exit code 13
make[1]: *** [debian/rules:25: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
[1]
[1] https://launchpadlibrarian.net/757917257/buildlog_ubuntu-plucky-
amd64.toil_6.1.0-4_BUILDING.txt.gz
** Affects: toil (Ubuntu)
Importance: Undecided
Status: New
** Tags: ftbfs update-excuse
** Tags added: ftbfs update-excuse
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https://bugs.launchpad.net/bugs/2087890
Title:
toil fails to build from source due to the multiple test failures
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