Public bug reported:
FAIL: testRank.sh
=================
/<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/test
/<<PKGBUILDDIR>>/test
[V] testing FastRank...done.
[V] testing RunLengthBitVector...done.
[V] testing E2Append:
[V]rank class libmaus2::rank::ERank222BAppend writer type
libmaus2::bitio::BitWriterTemplate<unsigned long, unsigned long*,
9223372036854775808ul> data type unsigned long
[V] loop 1
[V] libmaus2::rank::ERank222BAppendDynamic loop 1
[V] loop 2
[V] libmaus2::rank::ERank222BAppendDynamic loop 2
[V] loop 3
[V] libmaus2::rank::ERank222BAppendDynamic loop 3
[V] loop 4
[V] libmaus2::rank::ERank222BAppendDynamic loop 4
[V] loop 5
[V] libmaus2::rank::ERank222BAppendDynamic loop 5
[V] testing WaveletTree rank/select random (size 128)...done.
[V] testing WaveletTree smaller/larger...done.
[V] testing CacheLineRank:
terminate called after throwing an instance of
'libmaus2::exception::LibMausException'
what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to
allocate 1398102 elements (11184816 bytes)
current total allocation 11521707
/<<PKGBUILDDIR>>/src/.libs/libmaus2_stacktrace.so.2(libmaus2::stacktrace::StackTrace::StackTrace()+0x78)[0xe1f1759148f8]
/<<PKGBUILDDIR>>/src/.libs/libmaus2_exception.so.2(libmaus2::exception::LibMausException::LibMausException()+0x40)[0xe1f176172ae0]
/<<PKGBUILDDIR>>/src/.libs/testRank(libmaus2::autoarray::AutoArrayAllocate<unsigned
long, (libmaus2::autoarray::alloc_type)2>::allocate(unsigned
long)+0xc4)[0xc24e632beb84]
/<<PKGBUILDDIR>>/src/.libs/testRank(testCacheLineRank()+0x88)[0xc24e6329e248]
/<<PKGBUILDDIR>>/src/.libs/testRank(main+0x134)[0xc24e6328b674]
/lib/aarch64-linux-gnu/libc.so.6(+0x22294)[0xe1f175b72294]
/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0x98)[0xe1f175b72378]
/<<PKGBUILDDIR>>/src/.libs/testRank(_start+0x30)[0xc24e6328c8f0]
./testRank.sh: line 7: 97773 Aborted (core dumped)
../src/testRank
Exiting with return code 134
FAIL testRank.sh (exit status: 134)
FAIL: testdnarank.sh
====================
/<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/test
/<<PKGBUILDDIR>>/test
[V] running short tests...
AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 16
elements (128 bytes)
current total allocation 341115
/<<PKGBUILDDIR>>/src/.libs/libmaus2_stacktrace.so.2(libmaus2::stacktrace::StackTrace::StackTrace()+0x78)[0xf169e2f248f8]
/<<PKGBUILDDIR>>/src/.libs/libmaus2_exception.so.2(libmaus2::exception::LibMausException::LibMausException()+0x40)[0xf169e40d2ae0]
/<<PKGBUILDDIR>>/src/.libs/testdnarank(libmaus2::autoarray::AutoArrayAllocate<unsigned
long, (libmaus2::autoarray::alloc_type)2>::allocate(unsigned
long)+0xc4)[0xc7c4a5b5fea4]
/<<PKGBUILDDIR>>/src/.libs/testdnarank(libmaus2::rank::DNARankTemplate<64u>::loadFromRunLength(std::vector<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > > > const&, unsigned long)+0x108)[0xc7c4a5b79208]
/<<PKGBUILDDIR>>/src/.libs/testdnarank(void
testShort<libmaus2::rank::DNARankTemplate<64u> >(unsigned
long)+0x2a0)[0xc7c4a5b971e0]
/<<PKGBUILDDIR>>/src/.libs/testdnarank(main+0x1d8)[0xc7c4a5b417f8]
/lib/aarch64-linux-gnu/libc.so.6(+0x22294)[0xf169e3062294]
/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0x98)[0xf169e3062378]
/<<PKGBUILDDIR>>/src/.libs/testdnarank(_start+0x30)[0xc7c4a5b41af0]
Exiting with return code 1
FAIL testdnarank.sh (exit status: 1)
[1]
[1]
https://launchpadlibrarian.net/758234066/buildlog_ubuntu-plucky-arm64.libmaus2_2.0.813+ds-3_BUILDING.txt.gz
** Affects: libmaus2 (Ubuntu)
Importance: Undecided
Status: New
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https://bugs.launchpad.net/bugs/2088011
Title:
libmaus2 fails to build due to the tests running out of memory (arm64,
armhf, s390x)
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