Public bug reported:
The package has not the dependence on libguava-java which is required to run
java -jar /usr/share/java/picard.jar CollectAlignmentSummaryMetrics
Without libguava it returns an exception
Exception in thread "main" java.lang.NoClassDefFoundError:
com/google/common/collect/Lists
at
picard.analysis.AlignmentSummaryMetricsCollector.get3PrimeSoftClippedBases(AlignmentSummaryMetricsCollector.java:130)
at
picard.analysis.AlignmentSummaryMetricsCollector$IndividualAlignmentSummaryMetricsCollector.collectReadData(AlignmentSummaryMetricsCollector.java:356)
ProblemType: Bug
DistroRelease: Ubuntu 24.04
Package: picard-tools 3.1.1+dfsg-1
ProcVersionSignature: Ubuntu 6.8.0-57.59-generic 6.8.12
Uname: Linux 6.8.0-57-generic x86_64
ApportVersion: 2.28.1-0ubuntu3.5
Architecture: amd64
CasperMD5CheckResult: unknown
CurrentDesktop: ubuntu:GNOME
Date: Fri Apr 11 17:30:54 2025
InstallationDate: Installed on 2020-10-06 (1648 days ago)
InstallationMedia: Ubuntu 20.04.1 LTS "Focal Fossa" - Release amd64 (20200731)
PackageArchitecture: all
SourcePackage: picard-tools
UpgradeStatus: Upgraded to noble on 2024-09-02 (221 days ago)
** Affects: picard-tools (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug noble wayland-session
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https://bugs.launchpad.net/bugs/2107140
Title:
missing dependence on libguava-java
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