Public bug reported: python-biopython 1.86+dfsg-1 FTBFS in Resolute:
https://people.canonical.com/~ginggs/ftbfs-report/test- rebuild-20260320-resolute-resolute.html WARNING: Failed to get a method signature for Bio.Align.interfaces.AlignmentIterator.__annotate_func__: None is not a callable object WARNING: Failed to get a method signature for Bio.Align.interfaces.AlignmentWriter.__annotate_func__: None is not a callable object WARNING: autodoc: failed to import attribute 'Record.__annotate_func__' from module 'Bio.GenBank.Record'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'Record' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: autodoc: failed to import attribute 'InsdcScanner.__annotate_func__' from module 'Bio.GenBank.Scanner'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'InsdcScanner' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: autodoc: failed to import attribute 'EmblScanner.__annotate_func__' from module 'Bio.GenBank.Scanner'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'EmblScanner' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: Failed to get a method signature for Bio.GenBank.Scanner.GenBankScanner.__annotate_func__: None is not a callable object WARNING: autodoc: failed to import attribute 'PDBList.__annotate_func__' from module 'Bio.PDB.PDBList'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'PDBList' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: autodoc: failed to import method 'IC_Chain.__annotate_func__' from module 'Bio.PDB.internal_coords'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'IC_Chain' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: autodoc: failed to import attribute 'PrintFormat.__annotate_func__' from module 'Bio.Restriction.PrintFormat'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 461, in safe_getattr return getattr(obj, name, *defargs) AttributeError: type object 'PrintFormat' has no attribute '__annotate_func__' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 288, in import_object obj = attrgetter(obj, mangled_name) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 384, in get_attr return autodoc_attrgetter(obj, name, *defargs, registry=self.env._registry) File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/__init__.py", line 3149, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/usr/lib/python3/dist-packages/sphinx/util/inspect.py", line 477, in safe_getattr raise AttributeError(name) from exc AttributeError: __annotate_func__ [autodoc.import_object] WARNING: Failed to get a method signature for Bio.Seq.Seq.__annotate_func__: None is not a callable object ** Affects: python-biopython (Ubuntu) Importance: Undecided Status: New ** Tags: ftbfs update-excuse -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2147029 Title: python-biopython: FTBFS in Resolute To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/python-biopython/+bug/2147029/+subscriptions -- ubuntu-bugs mailing list [email protected] https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
