Public bug reported:
The bitshuffle 0.5.2-3 update is stuck in stonking-proposed due to its
reverse-dependency python-fabio failing autopkgtests in armhf.
======================================================================
ERROR: test_bug_479 (fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/fabio/test/codecs/test_eigerimage.py",
line 132, in test_bug_479
e.write(fn)
~~~~~~~^^^^
File "/usr/lib/python3/dist-packages/fabio/eigerimage.py", line 207, in write
hds = data_grp.create_dataset(
"data", data=data, chunks=chunks, **compression
)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py",
line 193, in create_dataset
dsid = dataset.make_new_dset(group, shape, dtype, data, name, **kwds)
File
"/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/dataset.py", line
177, in make_new_dset
dset_id = h5d.create(parent.id, name, tid, sid, dcpl=dcpl, dapl=dapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5d.pyx", line 134, in
h5py._debian_h5py_serial.h5d.create
ValueError: Unable to synchronously create dataset (error during user callback)
======================================================================
ERROR: test_write (fabio.test.codecs.test_eigerimage.TestEiger.test_write)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/fabio/test/codecs/test_eigerimage.py",
line 116, in test_write
e.save(fn)
~~~~~~^^^^
File "/usr/lib/python3/dist-packages/fabio/fabioimage.py", line 756, in save
self.write(fname)
~~~~~~~~~~^^^^^^^
File "/usr/lib/python3/dist-packages/fabio/eigerimage.py", line 203, in write
hds = data_grp.create_dataset(
f"data_{i + 1:06d}", data=data, chunks=chunks, **compression
)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py",
line 193, in create_dataset
dsid = dataset.make_new_dset(group, shape, dtype, data, name, **kwds)
File
"/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/dataset.py", line
177, in make_new_dset
dset_id = h5d.create(parent.id, name, tid, sid, dcpl=dcpl, dapl=dapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5d.pyx", line 134, in
h5py._debian_h5py_serial.h5d.create
ValueError: Unable to synchronously create dataset (error during user callback)
======================================================================
ERROR: test_write (fabio.test.codecs.test_limaimage.TestLima.test_write)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/fabio/test/codecs/test_limaimage.py",
line 119, in test_write
e.save(fn)
~~~~~~^^^^
File "/usr/lib/python3/dist-packages/fabio/fabioimage.py", line 756, in save
self.write(fname)
~~~~~~~~~~^^^^^^^
File "/usr/lib/python3/dist-packages/fabio/limaimage.py", line 318, in write
dataset = detector_grp.create_dataset(
"data",
...<3 lines>...
**compression,
)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py",
line 193, in create_dataset
dsid = dataset.make_new_dset(group, shape, dtype, data, name, **kwds)
File
"/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/dataset.py", line
177, in make_new_dset
dset_id = h5d.create(parent.id, name, tid, sid, dcpl=dcpl, dapl=dapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5d.pyx", line 134, in
h5py._debian_h5py_serial.h5d.create
ValueError: Unable to synchronously create dataset (error during user callback)
======================================================================
ERROR: test_write (fabio.test.codecs.test_lambdaimage.TestLambda.test_write)
read file using fabio.open and save and reopen ... check consistency
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/fabio/test/codecs/test_lambdaimage.py",
line 91, in test_write
obj.write(dst)
~~~~~~~~~^^^^^
File "/usr/lib/python3/dist-packages/fabio/lambdaimage.py", line 273, in write
dataset = detector_grp.create_dataset(
"data",
...<3 lines>...
**compression,
)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py",
line 193, in create_dataset
dsid = dataset.make_new_dset(group, shape, dtype, data, name, **kwds)
File
"/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/dataset.py", line
177, in make_new_dset
dset_id = h5d.create(parent.id, name, tid, sid, dcpl=dcpl, dapl=dapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5d.pyx", line 134, in
h5py._debian_h5py_serial.h5d.create
ValueError: Unable to synchronously create dataset (error during user callback)
** Affects: bitshuffle (Ubuntu)
Importance: Undecided
Assignee: Grayson Wolf (graysonwolf)
Status: New
** Tags: update-excuse
** Changed in: bitshuffle (Ubuntu)
Assignee: (unassigned) => Grayson Wolf (graysonwolf)
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https://bugs.launchpad.net/bugs/2167953
Title:
bitshuffle update causes regression in python-fabio for armhf
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