This was already noticed by Gentoo and reported:
https://sourceware.org/bugzilla/show_bug.cgi?id=34468

** Bug watch added: Sourceware.org Bugzilla #34468
   https://sourceware.org/bugzilla/show_bug.cgi?id=34468

** Also affects: elfutils via
   https://sourceware.org/bugzilla/show_bug.cgi?id=34468
   Importance: Unknown
       Status: Unknown

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https://bugs.launchpad.net/bugs/2169676

Title:
  libelf elf_update(ELF_C_WRITE) with ELF_F_LAYOUT corrupts section
  headers when the section header table is not at the end of the file
  (patchelf output); breaks debugedit

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