I haven't managed to identify the exact configuration that is causing
this; I have created a new user and migrated all my personal settings to
it, excluding the ".*" files in my ~/ directory.

This has fixed both this bug and
https://bugs.launchpad.net/ubuntu/+source/gnome-panel/+bug/187862 (bug
187862)

However this appears to have lead to another bug coming into effect:
https://bugs.launchpad.net/ubuntu/+source/gnome-panel/+bug/192172 (bug
192172)

I am not exactly sure what has caused this. However, I would recommend
anyone else who has experienced this bug to create a new user and
migrate all files across to it. :)

** Changed in: gnome-panel (Ubuntu)
       Status: Incomplete => Fix Released

** Changed in: gnome-panel (Ubuntu)
       Status: Fix Released => Fix Committed

-- 
Notification Area intermittent right click error- Panel's menu displayed 
instead of the application's in Area.
https://bugs.launchpad.net/bugs/187858
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